miRBase entry: ggo-mir-25

Stem-loop ggo-mir-25

Accession

MI0003061

Description

Gorilla gorilla ggo-mir-25 precursor miRNA

Literature search

1 open access papers mention ggo-mir-25
(1 sentences)

Sequence

ggccaguguugagaggcggagacuugggcaauugcuggacgcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcc
((((.((((((..((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..)))))).))))

Structure

    a      ag    g     uu g     ug    acg 
ggcc guguug  aggc gagac  g gcaau  cugg   c
|||| ||||||  |||| |||||  | |||||  ||||    
ccgg cgugac  UCUG CUCUG  C CGUUA  gguc   u
    c      AG    G     UU A     Cg    ccg

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 77984485-77984568 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ggo-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-25

Accession	MIMAT0002760
Description	Gorilla gorilla ggo-miR-25 mature miRNA
Sequence	52 - CAUUGCACUUGUCUCGGUCUGA - 73
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24