miRBase entry: ppa-mir-19b-2

Stem-loop ppa-mir-19b-2

Accession

MI0003103

Description

Pan paniscus ppa-mir-19b-2 precursor miRNA

Sequence

acauugcuacuuacaauuaguuuugcagguuugcauuucagcguauauauguauauguggcUGUGCAAAUCCAUGCAAAACUGAuugugauaaugu
((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))

Structure

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 133615965-133616060 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppa-mir-19b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-19b

Accession	MIMAT0002684
Description	Pan paniscus ppa-miR-19b mature miRNA
Sequence	62 - UGUGCAAAUCCAUGCAAAACUGA - 84
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24