Stem-loop ppy-mir-106a

Accession

MI0003109

Description

Pongo pygmaeus ppy-mir-106a precursor miRNA

Sequence

ccuuggccauguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucuacugcaaugcaagcacuucuuacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure

  u   cc      -        A  G     G   C   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacauu uucacgaa gu acguc auc aga  
  u   au      c        c  a     -   u   g 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 133613123-133613203 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-106a

Mature ppy-miR-106a

• Accession: MIMAT0002799
• Description: Pongo pygmaeus ppy-miR-106a mature miRNA
• Sequence: 13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24