Stem-loop mmu-mir-532

Accession

MI0003206

Symbol

MGI: Mir532

Description

Mus musculus mmu-mir-532 precursor miRNA mir-532

Gene
family

RF04284; mir-532

Literature search

13 open access papers mention mmu-mir-532
(76 sentences)

Sequence

134521 reads, 363 reads per million, 107 experiments

cagauuugcuuuuucucuucCAUGCCUUGAGUGUAGGACCGUugacaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagagcaagccuucuc
.(((...((((.(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).))))))).))))..))).

Structure

c   uuu    u       c  U      A    A   CC  ugaca 
 aga   gcuu uucucuu CA GCCUUG GUGU GGA  GU     u
 |||   |||| ||||||| || |||||| |||| |||  ||     c
 ucu   cgaa gagaggA GU CGGAAC CACA CCU  ca     u
c   -uc    c       C  U      C    C   CC  uuaau 

Annotation confidence High

Genome context

chrX: 7248402-7248497 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mmu-mir-532

Mature mmu-miR-532-5p

• Accession: MIMAT0002889
• Description: Mus musculus mmu-miR-532-5p mature miRNA
• Sequence: 21 - CAUGCCUUGAGUGUAGGACCGU - 42
• Evidence: experimental ; PCR [1], miRAP-cloned [2], cloned [3], Illumina [4-5]

Mature mmu-miR-532-3p

• Accession: MIMAT0004781
• Description: Mus musculus mmu-miR-532-3p mature miRNA
• Sequence: 58 - CCUCCCACACCCAAGGCUUGCA - 79
• Evidence: experimental ; cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PCR-based expression analysis and identification of microRNAs
   "Lu DP, Read RL, Humphreys DT, Battah FM, Martin DIK, Rasko JEJ"
   "RNAi and Gene Silencing (2005) 1:44-49


5. PubMed ID: 16973894
   Mouse microRNA profiles determined with a new and sensitive cloning method
   "Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H"
   "Nucleic Acids Res (2006) 34:e115