Stem-loop tni-mir-194

Accession

MI0003260

Description

Tetraodon nigroviridis tni-mir-194 precursor miRNA

Gene family

MIPF0000055; mir-194

Sequence

gcgcgcuggaUGUAACAGCAACUCCAUGUGGaagcuguauguguguuccaguggaagugcuguuaccugcagagauccacc
...(.(((.(.(((((((((..(((((.(((((((.......)).))))))))))..))))))))).).))).).......

Structure

----gcg g   g U         AC     G     -  ug 
       c cug a GUAACAGCA  UCCAU UGGaa gc  u
       | ||| | |||||||||  ||||| ||||| ||  a
       g gac u cauugucgu  aggug accuu ug  u
ccaccua a   g c         ga     -     g  ug 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

7: 7655321-7655401 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-194

Mature tni-miR-194

• Accession: MIMAT0002944
• Description: Tetraodon nigroviridis tni-miR-194 mature miRNA
• Sequence: 11 - UGUAACAGCAACUCCAUGUGG - 31
• Evidence: not_experimental

References