miRBase entry: tni-mir-27b

Stem-loop tni-mir-27b


Accession
MI0003268
Description
Tetraodon nigroviridis tni-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

aggcacagagcuuagcugauuggugaacagugauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCAccug
(((..((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))..))).

Structure
-   ca            g    g       u  uug 
 agg  cagagcuuagcu auug ugaacag ga   a
 |||  |||||||||||| |||| ||||||| ||   u
 ucc  GUCUUGAAUCGG UGAC ACUUguu cu   u
g   AC            -    -       u  ccu 


Annotation confidence Not enough data
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Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
12: 8516513-8516586 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tni-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-27b

Accession MIMAT0002952
Description Tetraodon nigroviridis tni-miR-27b mature miRNA
Sequence 49 - UUCACAGUGGCUAAGUUCUGCA - 70
Evidence not_experimental

References