Stem-loop tni-mir-23b

Accession

MI0003270

Description

Tetraodon nigroviridis tni-mir-23b precursor miRNA

Sequence

7671 reads, 281.0 reads per million, 3 experiments

ggcugugAGGGUUCCUGGCGUGCUGAUUUgugaccuaugauaaaAUCACAUUGCCAGGGAUUACCAcaccgcc
(((.(((.((((((((((((((.((((((.............)))))))).))))))))))..)).))).)))

Structure

   u   A  --          -  C      gugac 
ggc gug GG  GUUCCUGGCG UG UGAUUU     c
||| ||| ||  |||||||||| || ||||||     u
ccg cac CC  UAGGGACCGU AC ACUAaa     a
   c   A  AU          U  -      auagu 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

12: 8516219-8516291 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-23b

Mature tni-miR-23b-5p

• Accession: MIMAT0052946
• Description: Tetraodon nigroviridis tni-miR-23b-5p mature miRNA
• Sequence: 8 - AGGGUUCCUGGCGUGCUGAUUU - 29
• Evidence: not_experimental

Mature tni-miR-23b-3p

• Accession: MIMAT0002954
• Description: Tetraodon nigroviridis tni-miR-23b-3p mature miRNA
• Sequence: 45 - AUCACAUUGCCAGGGAUUACCA - 66
• Evidence: not_experimental

References