Stem-loop tni-mir-1

Accession

MI0003424

Description

Tetraodon nigroviridis tni-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

auuaccuccuuaguguacauacuucuuuauguacccauaugaacauaugauaacuaUGGAAUGUAAAGAAGUAUGUAUucuuggugagguga
.(((((((((.((.((((((((((((((((((..(((((...............))))).)))))))))))))))))).)).)).)))))))

Structure

a       -  u  u                  ac     ugaaca 
 uuaccuc cu ag guacauacuucuuuaugu  ccaua      u
 ||||||| || || ||||||||||||||||||  |||||      a
 aguggag gg uc UAUGUAUGAAGAAAUGUA  GGUau      u
-       u  u  u                  -A     caauag 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

15_random: 1423482-1423573 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-1

Mature tni-miR-1

• Accession: MIMAT0003072
• Description: Tetraodon nigroviridis tni-miR-1 mature miRNA
• Sequence: 57 - UGGAAUGUAAAGAAGUAUGUAU - 78
• Evidence: not_experimental

References