Stem-loop tni-mir-15b

Accession

MI0003448

Description

Tetraodon nigroviridis tni-mir-15b precursor miRNA

Sequence

92414 reads, 3389.0 reads per million, 3 experiments

gcccuuagacugcuuUAGCAGCGCAUCAUGGUUUGUAaugauguggaaaaaaggugCAAACCAUAAUUUGCUGCUUUagaauuuuaaggaa
..(((((((...((..(((((((.((.((((((((((.................)))))))))).)).)))))))..))...)))))))..

Structure

gc       cug  uU       C  C          augaugu 
  ccuuaga   cu  AGCAGCG AU AUGGUUUGUA       g
  |||||||   ||  ||||||| || ||||||||||       g
  ggaauuu   ga  UCGUCGU UA UACCAAACgu       a
aa       uaa  UU       U  A          ggaaaaa 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

16: 2089810-2089900 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-15b

Mature tni-miR-15b-5p

• Accession: MIMAT0003086
• Description: Tetraodon nigroviridis tni-miR-15b-5p mature miRNA
• Sequence: 16 - UAGCAGCGCAUCAUGGUUUGUA - 37
• Evidence: not_experimental

Mature tni-miR-15b-3p

• Accession: MIMAT0052983
• Description: Tetraodon nigroviridis tni-miR-15b-3p mature miRNA
• Sequence: 57 - CAAACCAUAAUUUGCUGCUUU - 77
• Evidence: not_experimental

References