miRBase entry: hsa-mir-654

Stem-loop hsa-mir-654


Accession
MI0003676
Symbol
HGNC: MIR654
Description
Homo sapiens hsa-mir-654 precursor miRNA mir-654
Gene
family?
RF01922; mir-654

Literature search
29 open access papers mention hsa-mir-654
(78 sentences)

Sequence

4783 reads, 83 reads per million, 84 experiments
ggguaaguggaaagaUGGUGGGCCGCAGAACAUGUGCugaguucgugccaUAUGUCUGCUGACCAUCACCUUuagaagccc
((((......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))....))))

Structure
    aagugg    a      G C     A      - uga 
gggu      aaag UGGUGG C GCAGA CAUGUG C   g
||||      |||| |||||| | ||||| |||||| |   u
cccg      uUUC ACUACC G CGUCU GUAUac g   u
    --aaga    C      A U     -      c ugc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr14: 101040219-101040299 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from hsa-mir-654
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-654 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-654-5p

Accession MIMAT0003330
Description Homo sapiens hsa-miR-654-5p mature miRNA
Sequence 16 - UGGUGGGCCGCAGAACAUGUGC - 37
Evidence experimental
Microarray [1], SAGE [1], cloned [2]
Database links
Predicted targets

Mature hsa-miR-654-3p

Accession MIMAT0004814
Description Homo sapiens hsa-miR-654-3p mature miRNA
Sequence 51 - UAUGUCUGCUGACCAUCACCUU - 72
Evidence experimental
cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16505370
    The colorectal microRNAome
    "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
    "Proc Natl Acad Sci U S A (2006) 103:3687-3692