Stem-loop sv40-mir-S1

Accession

MI0003689

Description

Simian virus 40 sv40-mir-S1 precursor miRNA

Sequence

ugaacagacugugagggcUGAGGGGCCUGAAAUGAGCCUUgagacugugaaucaauGCCUGUUUCAUGCCCUGAGUcuuccauguucu
.(((((...((.(((((((..(((((.(((((((.((.((((.........)))).)).))))))).))))).)))))))))))))).

Structure

u     gac  u       GA     C       A  C    gac 
 gaaca   ug gagggcU  GGGGC UGAAAUG GC UUga   u
 |||||   || |||||||  ||||| ||||||| || ||||   g
 cuugu   ac cuucUGA  UCCCG ACUUUGU CG aacu   u
u     ---  -       -G     U       C  u    aag 

Annotation confidence Not enough data

Genome context

Unknown

Mature sv40-miR-S1-5p

• Accession: MIMAT0003344
• Description: Simian virus 40 sv40-miR-S1-5p mature miRNA
• Sequence: 19 - UGAGGGGCCUGAAAUGAGCCUU - 40
• Evidence: experimental ; Northern [1]

Mature sv40-miR-S1-3p

• Accession: MIMAT0003345
• Description: Simian virus 40 sv40-miR-S1-3p mature miRNA
• Sequence: 57 - GCCUGUUUCAUGCCCUGAGU - 76
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 15931223
   SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells
   "Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D"
   "Nature (2005) 435:682-686