Accession
MI0003725
Description
Epstein Barr virus
ebv-mir-BART3 precursor miRNA
Sequence
ccuuugguggaACCUAGUGUUAGUGUUGUGCUguaaauaaguguccagCGCACCACUAGUCACCAGGUGUcaccggagg
((((((((((.((((.(((((((((.(((((((............))))))).)))))).))).)))).))))))))))
((((((((((.((((.(((((((((.(((((((............))))))).)))))).))).)))).))))))))))
Structure
a A - U uaaau
ccuuuggugg ACCU GUG UUAGUG UGUGCUg a
|||||||||| |||| ||| |||||| |||||||
ggaggccacU UGGA CAC GAUCAC ACGCgac a
G C U C cugug
Annotation confidence
Low
Do you think this miRNA is real?
Comments
mir-BART3 was discovered independently by two groups. Cai et al identified mature miRNA products from both arms of the hairpin precursor and mapped the ends of the mature sequences by cloning [1]. Grundhoff et al confirmed that the 5' arm gives rise to a mature miRNA product, but didnot experimentally determine the extents of that product [2]. The mature miRNA names reflect cloning frequencies from Landgraf et al. [3], and may differ subtly from previous annotations. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
HHV507799: 139076-139154 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from ebv-mir-BART3
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
ebv-mir-BART3 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature ebv-miR-BART3-5p
| Accession | MIMAT0003410 |
| Description | Epstein Barr virus ebv-miR-BART3-5p mature miRNA |
| Sequence | 12 - ACCUAGUGUUAGUGUUGUGCU - 32 |
| Evidence |
experimental
cloned [1,3], array [2], Northern [2] |
Mature ebv-miR-BART3-3p
| Accession | MIMAT0003411 |
| Description | Epstein Barr virus ebv-miR-BART3-3p mature miRNA |
| Sequence | 49 - CGCACCACUAGUCACCAGGUGU - 70 |
| Evidence |
experimental
cloned [1,3] |
References
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