Accession
MI0003727
Description
Epstein Barr virus
ebv-mir-BART5 precursor miRNA
Sequence
gcucuguggcaccuCAAGGUGAAUAUAGCUGCCCAUCGacguaucgcuggaaaccgGUGGGCCGCUGUUCACCUaaagugacgcaaggu
(((.((((.(((....((((((..(((((.((((((((..((.((....)).)))))))))).)))))))))))...))).)))).)))
(((.((((.(((....((((((..(((((.((((((((..((.((....)).)))))))))).)))))))))))...))).)))).)))
Structure
c g cuCA AU U ac a g gcu ugug cac AGGUGA AUAGC GCCCAUCG gu uc c ||| |||| ||| |||||| ||||| |||||||| || || ugg acgc gug UCCACU UGUCG CGGGUGgc ca ag u a a -aaa -- C -- a g
Annotation confidence
Low
Do you think this miRNA is real?
Comments
mir-BART5 was discovered independently by two groups. Cai et al mapped the ends of the mature sequence by cloning [1]. Grundhoff et al confirmed that the 5' arm gives rise to a mature miRNA product, but didnot experimentally determine the extents of that product [2]. This sequence was misnamed miR-BART6 in [2].
Genome context
HHV507799: 139661-139749 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from ebv-mir-BART5
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
ebv-mir-BART5 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature ebv-miR-BART5-5p
| Accession | MIMAT0003413 |
| Description | Epstein Barr virus ebv-miR-BART5-5p mature miRNA |
| Sequence | 15 - CAAGGUGAAUAUAGCUGCCCAUCG - 38 |
| Evidence |
experimental
cloned [1,3], array [2], Northern [2] |
Mature ebv-miR-BART5-3p
| Accession | MIMAT0009205 |
| Description | Epstein Barr virus ebv-miR-BART5-3p mature miRNA |
| Sequence | 57 - GUGGGCCGCUGUUCACCU - 74 |
| Evidence |
experimental
454 [4] |
References
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