Stem-loop mmu-mir-3059

Accession

MI0004412

Symbol

MGI: Mir3059

Description

Mus musculus mmu-mir-3059 precursor miRNA mir-3059

Gene
family

RF03520; mir-3059

Literature search

1 open access papers mention mmu-mir-3059
(1 sentences)

Sequence

577 reads, 7 reads per million, 20 experiments

ggugguacgcccUUUCCUCUCUGCCCCAUAGGGUguagcucuaacuacCCUCUAGGGAAGAGAAGGUUGGgugaacagccu
(((.((.(((((...(((((((..(((.(((((.((((......)))).)))))))).)))).)))..))))).)).))).

Structure

-   g  a     UUU   -    GC   A     U    cu 
 ggu gu cgccc   CCU CUCU  CCC UAGGG guag  c
 ||| || |||||   ||| ||||  ||| ||||| ||||   
 ccg ca gugGG   GGA GAGA  GGG AUCUC cauc  u
u   a  a     -UU   A    -A   -     C    aa 

Annotation confidence High

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chr10: 101772692-101772772 [+]

Mature mmu-miR-3059-5p

• Accession: MIMAT0014811
• Description: Mus musculus mmu-miR-3059-5p mature miRNA
• Sequence: 13 - UUUCCUCUCUGCCCCAUAGGGU - 34
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-3059-3p

• Accession: MIMAT0014812
• Description: Mus musculus mmu-miR-3059-3p mature miRNA
• Sequence: 49 - CCUCUAGGGAAGAGAAGGUUGG - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298