Accession
MI0004710
Description
Physcomitrella patens
ppt-MIR1211 precursor miRNA
Sequence
uuacaugauugucaacAGGGAGGGAUGGUUAUGCAAGagggugcaagagguggcagaucaucucuugaagcaucuUGCAUGACCGUCUCUUCCUGCagguagaguuauguaa
.(((((((((.((..(((((((((((((((((((((((.(.(.(((((((((......))))))))).).).)))))))))))))))))))))))...).).))))))))).
.(((((((((.((..(((((((((((((((((((((((.(.(.(((((((((......))))))))).).).)))))))))))))))))))))))...).).))))))))).
Structure
u g - -aa g g g gc uacaugauu u c cAGGGAGGGAUGGUUAUGCAAGa g u caagaggug a ||||||||| | | ||||||||||||||||||||||| | | ||||||||| auguauuga a g GUCCUUCUCUGCCAGUACGUucu c a guucucuac g a g u gaC a g a ua
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Talmor-Neiman et al. identified a mature miRNA from the 5' arm of this precursor, and called it miR1211 [1]. Axtell et al. show by deep sequencing that the 3' product is the predominant one [3]. The 5' miRNA is renamed miR1211* here.
Genome context
Chr04: 8310044-8310155 [-]
Database links
Mature ppt-miR1211-5p
| Accession | MIMAT0003900 |
| Description | Physcomitrella patens ppt-miR1211-5p mature miRNA |
| Sequence | 17 - AGGGAGGGAUGGUUAUGCAAG - 37 |
| Evidence |
experimental
Northern [1] |
Mature ppt-miR1211-3p
| Accession | MIMAT0004829 |
| Description | Physcomitrella patens ppt-miR1211-3p mature miRNA |
| Sequence | 76 - UGCAUGACCGUCUCUUCCUGC - 96 |
| Evidence |
experimental
454 [2] |
References
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