Accession
MI0004718
Description
Physcomitrella patens
ppt-MIR1219a precursor miRNA
Sequence
4951
reads,
200.0
reads per million, 10 experiments
ugaaguguggacgauggagagucagccuCUUCCUGCCUCUCACUAGCUUcaucccuuccucccuaaauuuuagucugggagggaaggaGCUAUUGGUGGUCAGGAAUAGcgcacccuucauuuauccacacuuca
(((((((((((.(((((((.((..((((.((((((((.(.((.(((((((.((((((((...((((...))))...)))))))).))))))).))).)).)))))).)).)))).)))))))..)))))))))))
(((((((((((.(((((((.((..((((.((((((((.(.((.(((((((.((((((((...((((...))))...)))))))).))))))).))).)).)))))).)).)))).)))))))..)))))))))))
Structure
-c a ca - C - U U C a ucc a
ugaagugugga gauggag gu gc cu UUCCUG CC C CA UAGCUUc ucccuucc cuaa
||||||||||| ||||||| || || || |||||| || | || ||||||| |||||||| |||| u
acuucacaccu uuacuuc ca cg GA AAGGAC GG G GU AUCGagg agggaggg gauu
au c -- c U U U - U a ucu u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr04: 10210326-10210460 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1219a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1219a-5p
| Accession | MIMAT0003908 |
| Description | Physcomitrella patens ppt-miR1219a-5p mature miRNA |
| Sequence | 29 - CUUCCUGCCUCUCACUAGCUU - 49 |
| Evidence |
experimental
Northern [1], 454 [2] |
Mature ppt-miR1219a-3p
| Accession | MIMAT0053655 |
| Description | Physcomitrella patens ppt-miR1219a-3p mature miRNA |
| Sequence | 89 - GCUAUUGGUGGUCAGGAAUAG - 109 |
| Evidence |
experimental
unknown |
References
|
