miRBase entry: xtr-mir-15b

Stem-loop xtr-mir-15b

Accession

MI0004800

Description

Xenopus tropicalis xtr-mir-15b precursor miRNA

Sequence

uguccuaaagaagugUAGCAGCACAUCAUGAUUUGCAugcuguauuauagauucuaaucauuuuuugcugcuucaugauauugggaaa
..((((((....(((.(((((((.(..((((((.(.(..((((...))))..)).))))))..).))))))).)))....))))))..

Structure

ug      agaa   U       C UC      U C ug    a 
  uccuaa    gug AGCAGCA A  AUGAUU G A  cugu  
  ||||||    ||| ||||||| |  |||||| | |  |||| u
  aggguu    uac ucgucgu u  uacuaa c u  gaua  
aa      auag   u       u uu      u - ua    u

Annotation confidence Not enough data

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Genome context

chr5: 103362195-103362282 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-15b

Accession	MIMAT0003561
Description	Xenopus tropicalis xtr-miR-15b mature miRNA
Sequence	16 - UAGCAGCACAUCAUGAUUUGCA - 37
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112