miRBase entry: xtr-mir-194-1

Stem-loop xtr-mir-194-1

Accession

MI0004857

Description

Xenopus tropicalis xtr-mir-194-1 precursor miRNA

Sequence

uaguguguaucaggUGUAACAGCAACUCCAUGUGGAcuuguccguauuccaguggagaugcuguuacuuuugaugggcac
..((((.(((((((.(((((((((.((((((.((((...........)))))))))).))))))))).))))))).))))

Structure

ua    g       U         A      G    cuug 
  gugu uaucagg GUAACAGCA CUCCAU UGGA    u
  |||| ||||||| ||||||||| |||||| ||||    c
  cacg guaguuu cauugucgu gaggug accu    c
--    g       u         a      -    uaug

Annotation confidence Not enough data

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Genome context

chr5: 6915454-6915533 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-194-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-194

Accession	MIMAT0003617
Description	Xenopus tropicalis xtr-miR-194 mature miRNA
Sequence	15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112