Stem-loop bmo-let-7

Accession

MI0004968

Description

Bombyx mori bmo-let-7 precursor miRNA

Literature search

11 open access papers mention bmo-let-7
(167 sentences)

Sequence

99443 reads, 17656 reads per million, 3 experiments

gguacugccgucggcuuguUGAGGUAGUAGGUUGUAUAGUacggaaauacaacacauaggugcgaCUGUAUAGCCUGCUAACUUUCCgagcugacggaaugaca
.((....(((((((((((..(((.((((((((((((((((.((.(..((.......))..).)))))))))))))))))).)))..)))))))))))....)).

Structure

g  acug           uU   G                a  g aa  ca 
 gu    ccgucggcuug  GAG UAGUAGGUUGUAUAGU cg a  ua  a
 ||    |||||||||||  ||| |||||||||||||||| || |  ||  c
 ca    ggcagucgagC  UUC AUCGUCCGAUAUGUCa gc u  au  a
a  guaa           CU   A                -  g gg  ac 

Annotation confidence High

Genome context

NW_004582019.1: 3373685-3373788 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bmo-let-7

Mature bmo-let-7-5p

• Accession: MIMAT0004190
• Description: Bombyx mori bmo-let-7-5p mature miRNA
• Sequence: 20 - UGAGGUAGUAGGUUGUAUAGU - 40
• Evidence: experimental ; Northern [1-3], RT-PCR [4], Illumina [5]

Mature bmo-let-7-3p

• Accession: MIMAT0015221
• Description: Bombyx mori bmo-let-7-3p mature miRNA
• Sequence: 66 - CUGUAUAGCCUGCUAACUUUCC - 87
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 17651473
   Characterization and expression patterns of let-7 microRNA in the silkworm (Bombyx mori)
   Liu S, Xia Q, Zhao P, Cheng T, Hong K, Xiang Z
   BMC Dev Biol (2007) 7:88


3. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


4. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


5. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148