Stem-loop bmo-mir-279a

Accession

MI0004982

Description

Bombyx mori bmo-mir-279a precursor miRNA

Literature search

7 open access papers mention bmo-mir-279a
(12 sentences)

Sequence

206647 reads, 2361.0 reads per million, 34 experiments

acgucaauuucuuucGAUGAGUGGAGGUUUAGUGCAUGUuuauuuacaccaUGACUAGAUCCACACUCAUCCAuggaaguugcga
.((.((((((((...((((((((..((((((((.((((...........))))))))))))..))))))))...)))))))))).

Structure

a  u        uuc        GA        G    Uuua 
 cg caauuucu   GAUGAGUG  GGUUUAGU CAUG    u
 || ||||||||   ||||||||  |||||||| ||||    u
 gc guugaagg   CUACUCAC  CUAGAUCA GUac    u
a  -        uAC        AC        -    caca 

Annotation confidence High

Genome context

dbj|BSVE01000015.1|: 12213406-12213490 [+]

Mature bmo-miR-279a-5p

• Accession: MIMAT0053128
• Description: Bombyx mori bmo-miR-279a-5p mature miRNA
• Sequence: 16 - GAUGAGUGGAGGUUUAGUGCAUGU - 39
• Evidence: experimental ; Northern [2], RT-PCR [3], Illumina [4]

Mature bmo-miR-279a-3p

• Accession: MIMAT0004204
• Description: Bombyx mori bmo-miR-279a-3p mature miRNA
• Sequence: 52 - UGACUAGAUCCACACUCAUCCA - 73
• Evidence: experimental ; Northern [2], RT-PCR [3], Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


4. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148