Stem-loop bmo-mir-283

Accession

MI0004984

Description

Bombyx mori bmo-mir-283 precursor miRNA

Literature search

4 open access papers mention bmo-mir-283
(4 sentences)

Sequence

2722 reads, 470 reads per million, 3 experiments

aacguuucccgacUAAAUAUCAGCUGGUAAUUCUgggcuuuauuaauccCAGGCUAUCAGCUGGUAUACAGuuaugauacgua
.((((.((..((((..(((((((((((((..((((((.((....)).)))))).)))))))))))))..))))..)).)))).

Structure

a    u  cc    AA             AU      c  u 
 acgu uc  gacU  AUAUCAGCUGGUA  UCUggg uu a
 |||| ||  ||||  |||||||||||||  |||||| ||  
 ugca ag  uuGA  UAUGGUCGACUAU  GGACcc aa u
a    u  ua    CA             -C      u  u 

Annotation confidence High

Genome context

NW_004581701.1: 692153-692235 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-283

Mature bmo-miR-283-5p

• Accession: MIMAT0004206
• Description: Bombyx mori bmo-miR-283-5p mature miRNA
• Sequence: 14 - UAAAUAUCAGCUGGUAAUUCU - 34
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-283-3p

• Accession: MIMAT0015235
• Description: Bombyx mori bmo-miR-283-3p mature miRNA
• Sequence: 50 - CAGGCUAUCAGCUGGUAUACAG - 71
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148