Accession
MI0004992
Description
Epstein Barr virus
ebv-mir-BART19 precursor miRNA
Sequence
guauccguguccugacaACAUUCCCCGCAAACAUGACAUGgguuaauuuaaacaugUUUUGUUUGCUUGGGAAUGCUcuuagggccuggaagc
((.((((.(((((((...(((((((.(((((((.((((((..(......)..)))))).)))))))..)))))))...))))))).)))).))
((.((((.(((((((...(((((((.(((((((.((((((..(......)..)))))).)))))))..)))))))...))))))).)))).))
Structure
a u caA -C U gg ua gu uccg guccuga CAUUCCC GCAAACA GACAUG u a || |||| ||||||| ||||||| ||||||| |||||| | cg aggu cgggauu GUAAGGG CGUUUGU UUguac a u a c cUC UU U aa uu
Annotation confidence
Low
Do you think this miRNA is real?
Comments
The arm of the precursor miRNA giving rise to the mature sequence was verified using microarray hybridisation and Northern blot, but the extents of the mature miRNA shown here are predicted and not experimentally determined [1]. This sequence was named miR-BART17 by Grundhoff et al [1]. The mature miRNA names and sequences reflect cloning frequencies from Landgraf et al. [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
HHV507799: 148198-148290 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from ebv-mir-BART19
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
ebv-mir-BART19 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature ebv-miR-BART19-5p
| Accession | MIMAT0004836 |
| Description | Epstein Barr virus ebv-miR-BART19-5p mature miRNA |
| Sequence | 18 - ACAUUCCCCGCAAACAUGACAUG - 40 |
| Evidence |
experimental
cloned [2] |
Mature ebv-miR-BART19-3p
| Accession | MIMAT0003718 |
| Description | Epstein Barr virus ebv-miR-BART19-3p mature miRNA |
| Sequence | 57 - UUUUGUUUGCUUGGGAAUGCU - 77 |
| Evidence |
experimental
array [1], Northern [1], cloned [2] |
References
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