Stem-loop osa-MIR395w

Accession

MI0005091

Description

Oryza sativa osa-MIR395w precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

39 open access papers mention osa-MIR395w
(167 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments

gaguucucuuuaaucauuucacauggcacuauuuuaaggccuacuguGUGAAGUGUUUGGGGGAUUCUC
(((((((((.....(((((((((((((.((......)))))....))))))))))...)))))))))..

Structure

--         uuaau          ----   a  au 
  gaguucucu     cauuucacau    ggc cu  u
  |||||||||     ||||||||||    ||| ||   
  CUUAGGGGG     GUGAAGUGug    ccg ga  u
CU         --UUU          ucau   -  au 

Annotation confidence Not enough data

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

Chr9: 6606291-6606359 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from osa-MIR395w

Mature osa-miR395w

• Accession: MIMAT0003877
• Description: Oryza sativa osa-miR395w mature miRNA
• Sequence: 48 - GUGAAGUGUUUGGGGGAUUCUC - 69
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638


2. PubMed ID: 20131478
   Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
   "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
   "Mol Genet Genomics (2009) 282:463-474