miRBase entry: mdo-mir-10a

Stem-loop mdo-mir-10a


Accession
MI0005273
Description
Monodelphis domestica mdo-mir-10a precursor miRNA


Sequence

1054869 reads, 17651 reads per million, 5 experiments
cugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuuguggucacAAAUUCGUAUCUAGGGGAAUAuguaguugacaua
.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))..

Structure
-c    uu        A    G     C          uaaggaa 
  uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
  ||||  |||||||| |||| ||||| ||||||||||        
  acag  gauguAUA GGGG AUCUA GCUUAAAcac       u
au    uu        A    -     U          ugguguu 


Annotation confidence High
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Genome context
chr2: 201156732-201156821 [-]

Database links

Mature mdo-miR-10a-5p

Accession MIMAT0004089
Description Monodelphis domestica mdo-miR-10a-5p mature miRNA
Sequence 15 - UACCCUGUAGAUCCGAAUUUGUG - 37
Evidence experimental
Microarray [1], PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-10a-3p

Accession MIMAT0026648
Description Monodelphis domestica mdo-miR-10a-3p mature miRNA
Sequence 57 - AAAUUCGUAUCUAGGGGAAUA - 77
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45