Stem-loop mdo-mir-100

Accession

MI0005281

Description

Monodelphis domestica mdo-mir-100 precursor miRNA

Sequence

439990 reads, 10012 reads per million, 5 experiments

ccuguugccacaAACCCGUAGAUCCGAACUUGUggugauauuccacacAAGCUUGUGUCUAUAGGUAUGugucugucagg
((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....))))

Structure

    -uugc    A   C      C   A      g  au 
ccug     caca ACC GUAGAU CGA CUUGUg ug  a
||||     |||| ||| |||||| ||| |||||| ||   
ggac     guGU UGG UAUCUG GUU GAAcac ac  u
    ugucu    A   A      U   C      -  cu 

Annotation confidence High

Genome context

chr4: 226180101-226180180 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-100

Mature mdo-miR-100-5p

• Accession: MIMAT0004097
• Description: Monodelphis domestica mdo-miR-100-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAACUUGU - 33
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-100-3p

• Accession: MIMAT0026656
• Description: Monodelphis domestica mdo-miR-100-3p mature miRNA
• Sequence: 49 - AAGCUUGUGUCUAUAGGUAUG - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45