Stem-loop mdo-mir-125b-2

Accession

MI0005292

Description

Monodelphis domestica mdo-mir-125b-2 precursor miRNA

Sequence

130582 reads, 2187 reads per million, 5 experiments

aaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccACGGGUUAGGCUCUUGGGAGC
..((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..

Structure

aa    U    C           Au     c 
  UCCC GAGA CCUAACUUGUG  guuua c
  |||| |||| |||||||||||  ||||| g
  AGGG UUCU GGAUUGGGCAc  uaaau u
CG    -    C           -c     u 

Annotation confidence High

Genome context

chr4: 226229991-226230053 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-125b-2

Mature mdo-miR-125b-5p

• Accession: MIMAT0004103
• Description: Monodelphis domestica mdo-miR-125b-5p mature miRNA
• Sequence: 3 - UCCCUGAGACCCUAACUUGUGA - 24
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-125b-2-3p

• Accession: MIMAT0031106
• Description: Monodelphis domestica mdo-miR-125b-2-3p mature miRNA
• Sequence: 43 - ACGGGUUAGGCUCUUGGGAGC - 63
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45