Stem-loop mmu-mir-465c-1

Accession

MI0005500

Symbol

MGI: Mir465c-1

Description

Mus musculus mmu-mir-465c-1 precursor miRNA mir-465

Gene
family

RF03464; mir-465

Literature search

8 open access papers mention mmu-mir-465c-1
(33 sentences)

Sequence

229588 reads, 4626 reads per million, 58 experiments

ugcaaugcccUAUUUAGAAUGGCGCUGAUCUGaugaauaaaaaaaaaauGAUCAGGGCCUUUCUAAGUAGAguaaggcuua
.((..(((.((((((((((.(((.((((((...................)))))).))).)))))))))).)))..))...

Structure

--u  aa   c          U   G      UGaugaau 
   gc  ugc cUAUUUAGAA GGC CUGAUC        a
   ||  ||| |||||||||| ||| ||||||        a
   cg  aug GAUGAAUCUU CCG GACUAG        a
auu  ga   A          U   G      uaaaaaaa 

Annotation confidence High

Genome context

chrX: 66825955-66826035 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mmu-mir-465c-1

Mature mmu-miR-465c-5p

• Accession: MIMAT0004873
• Description: Mus musculus mmu-miR-465c-5p mature miRNA
• Sequence: 11 - UAUUUAGAAUGGCGCUGAUCUG - 32
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-465c-3p

• Accession: MIMAT0004874
• Description: Mus musculus mmu-miR-465c-3p mature miRNA
• Sequence: 50 - GAUCAGGGCCUUUCUAAGUAGA - 71
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009