Stem-loop mmu-mir-466c-1

Accession

MI0005505

Symbol

MGI: Mir466c-1

Description

Mus musculus mmu-mir-466c-1 precursor miRNA mir-466

Gene
family

RF04052; mir-466

Literature search

27 open access papers mention mmu-mir-466c-1
(63 sentences)

Sequence

21133 reads, 354 reads per million, 100 experiments

guauauguguUGAUGUGUGUGUGCAUGUACAUAUgugaauaugauauacauAUACAUACACGCACACAUAAGAcacauaugagc
.((((((((((.(((((((((((.(((((..((((((.........))))))))))).)))))))))))..))))))))))...

Structure

--g          -G           C     CA      aau 
   uauauguguU  AUGUGUGUGUG AUGUA  UAUgug   a
   ||||||||||  ||||||||||| |||||  ||||||   u
   guauacacAG  UACACACGCAC UACAU  Auacau   g
cga          AA           A     --      aua 

Annotation confidence Not enough data

Genome context

chr2: 10481534-10481617 [+]

Clustered miRNAs

29 other miRNAs are < 10 kb from mmu-mir-466c-1

Mature mmu-miR-466c-5p

• Accession: MIMAT0004877
• Description: Mus musculus mmu-miR-466c-5p mature miRNA
• Sequence: 11 - UGAUGUGUGUGUGCAUGUACAUAU - 34
• Evidence: experimental ; Illumina [1]

Mature mmu-miR-466c-3p

• Accession: MIMAT0004878
• Description: Mus musculus mmu-miR-466c-3p mature miRNA
• Sequence: 52 - AUACAUACACGCACACAUAAGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009