miRBase entry: mmu-mir-544

Stem-loop mmu-mir-544

MGI: Mir544
Mus musculus mmu-mir-544 precursor miRNA
Gene family
MIPF0000436; mir-544

Literature search
5 open access papers mention mmu-mir-544
(103 sentences)


2137 reads, 68 reads per million, 38 experiments

---   cua    U           -         gauug 
   cac   ggga CUUGUUAAAAA GCAGAGUCU     a
   |||   |||| ||||||||||| |||||||||     g
   gug   cuCU GAACGAUUUUU CGUCUUAga     g
gua   -aa    C           A         accgg 

Annotation confidence High
Do you think this miRNA is real?
This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was independently shown in human and rat [2].

Genome context
chr12: 109729325-109729402 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from mmu-mir-544
Name Accession Chromosome Start End Strand Confidence

Database links

Mature mmu-miR-544-5p

Accession MIMAT0017282
Description Mus musculus mmu-miR-544-5p mature miRNA
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-544-3p

Accession MIMAT0004941
Description Mus musculus mmu-miR-544-3p mature miRNA
Evidence experimental
RAKE [1], Illumina [3-4]
Database links
Predicted targets


  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298