Stem-loop mmu-mir-598

Accession

MI0005556

Symbol

MGI: Mir598

Description

Mus musculus mmu-mir-598 precursor miRNA mir-598

Gene
family

RF01059; mir-598

Literature search

1 open access papers mention mmu-mir-598
(1 sentences)

Sequence

55587 reads, 97 reads per million, 93 experiments

gcugaugcugGCGGUGAUGCCGAUGGUGCGAGCugaaaaugggcugcUACGUCAUCGUCGUCAUCGUUAucaucaucau
(.(((((.(((((((((((.(((((((((.((((.......)))))).))..))))).))))))))))).))))).)..

Structure

-- c     c           C     --  -  G    ga 
  g ugaug ugGCGGUGAUG CGAUG  GU GC AGCu  a
  | ||||| ||||||||||| |||||  || || ||||  a
  c acuac AUUGCUACUGC GCUAC  CA cg ucgg  a
ua u     u           U     UG  U  -    gu 

Annotation confidence High

Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was independently shown in human and rat [2].

Genome context

chr14: 63727189-63727267 [+]

Mature mmu-miR-598-5p

• Accession: MIMAT0017283
• Description: Mus musculus mmu-miR-598-5p mature miRNA
• Sequence: 11 - GCGGUGAUGCCGAUGGUGCGAGC - 33
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-598-3p

• Accession: MIMAT0004942
• Description: Mus musculus mmu-miR-598-3p mature miRNA
• Sequence: 48 - UACGUCAUCGUCGUCAUCGUUA - 69
• Evidence: experimental ; RAKE [1], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298