Stem-loop mtr-MIR156c

Accession

MI0005584

Description

Medicago truncatula mtr-MIR156c precursor miRNA

Literature search

11 open access papers mention mtr-MIR156c
(79 sentences)

Sequence

942722 reads, 4205.0 reads per million, 111 experiments

gguggUGACAGAAGAGAGUGAGCACAcaugguguuuucuugcacgauuauguuuccugcuugaagcuauauguGCUUACUCUCUAUCUGUCACCCcac
((.(((((((((((((((((((((((.(((((...(((..(((.((.......)).)))..)))))))).)))))))))))))).)))))))))))..

Structure

--  u         -              c     guu   uu   c  uu 
  gg ggUGACAGA AGAGAGUGAGCACA auggu   uuc  gca ga  a
  || ||||||||| |||||||||||||| |||||   |||  ||| ||  u
  cC CCACUGUCU UCUCUCAUUCGugu uaucg   aag  cgu cu  g
ca  -         A              a     ---   uu   c  uu 

Annotation confidence High

Genome context

chr3: 36762577-36762674 [+]

Mature mtr-miR156c-5p

• Accession: MIMAT0011070
• Description: Medicago truncatula mtr-miR156c-5p mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCACA - 26
• Evidence: experimental ; Illumina [2]

Mature mtr-miR156c-3p

• Accession: MIMAT0026724
• Description: Medicago truncatula mtr-miR156c-3p mature miRNA
• Sequence: 74 - GCUUACUCUCUAUCUGUCACCC - 95
• Evidence: experimental ; Illumina [2]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105