Accession
MI0005674
Description
Physcomitrella patens
ppt-MIR477g precursor miRNA
Literature search
1 open access papers mention ppt-MIR477g
(10 sentences)
(10 sentences)
Sequence
72270
reads,
3310.0
reads per million, 10 experiments
guguucguuuuucUCCCUCAAAGGCUUCCAACAACagucggaauuaacucugaugcggccauuaucacugguugcagugaauuauucuaguucugCUGUUGGAAGCCUUCGUGGGAGAcgaaagaacc
..((((.(((.((((((.(.(((((((((((((.(((..(((((.((.((...((((((((.......))))))))..)).)))))))....))).))))))))))))).).)))))).))).)))).
..((((.(((.((((((.(.(((((((((((((.(((..(((((.((.((...((((((((.......))))))))..)).)))))))....))).))))))))))))).).)))))).))).)))).
Structure
gu g u U A A --uc u c uga uu guuc uuu ucUCCC C AAGGCUUCCAACA Cag ggaau aa uc ugcggcca a |||| ||| |||||| | ||||||||||||| ||| ||||| || || |||||||| u caag aag AGAGGG G UUCCGAAGGUUGU guc ucuua uu ag acguuggu c -c a c U C C uuga - a -ug ca
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
Talmor-Neiman et al. reported a mature miRNA derived from the 3' arm of this hairpin, and named it miR1213 [1]. A mature miRNA from the 5' arm was named miR477b [2]. Names of the miR477 family are rationalised in [3]. The mature sequences shown here are the most abundant clones by deep-sequencing [3].
Genome context
Chr22: 2647177-2647304 [-]
Database links
Mature ppt-miR477g-5p
| Accession | MIMAT0004362 |
| Description | Physcomitrella patens ppt-miR477g-5p mature miRNA |
| Sequence | 14 - UCCCUCAAAGGCUUCCAACAAC - 35 |
| Evidence |
experimental
Northern [2], 454 [3], cloned [3] |
Mature ppt-miR477g-3p
| Accession | MIMAT0003902 |
| Description | Physcomitrella patens ppt-miR477g-3p mature miRNA |
| Sequence | 96 - CUGUUGGAAGCCUUCGUGGGAGA - 118 |
| Evidence |
experimental
Northern [1], cloned [2], 454 [3] |
References
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