miRBase entry: rrv-miR-rR1-2

Stem-loop rrv-miR-rR1-2

Accession

MI0005719

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-2 precursor miRNA

Sequence

cagccucccgcgaccaugcugcgccccguauucgugcggaaggcaauucgaauAUACGGCGCUGCACGGUUGGAgggcgguug
(((((.(((.(((((.(((.(((((..((((((((((.....)))...)))))))..))))).))).)))))..))).)))))

Structure

     u   -g     a   u     cc       ---   g 
cagcc ccc  cgacc ugc gcgcc  guauucg   ugc g
||||| |||  ||||| ||| |||||  |||||||   ||| a
guugg ggg  GUUGG ACG CGCGG  UAuaagc   acg a
     c   AG     C   U     CA       uua   g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AF210726.1: 114328-114410 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-2

Accession	MIMAT0004408
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-2 mature miRNA
Sequence	54 - AUACGGCGCUGCACGGUUGGA - 74
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27