miRBase entry: rrv-miR-rR1-3

Stem-loop rrv-miR-rR1-3

Accession

MI0005720

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-3 precursor miRNA

Sequence

cagggCCCGAUGAGCAGUUAGUCCguguuuagucgcgcucccuguuguguuuaaauuuaacaggguuugcgacagacacugauucgcugcccaaagucgccguu
...(((.(..((.(((((.((((.((((((.((((((..((((((((..........))))))))..)))))))))))).)))).))))).))..)..)))...

Structure

cag   -C GA  A     U    C      a      cu        uguu 
   ggC  C  UG GCAGU AGUC guguuu gucgcg  cccuguug    u
   |||  |  || ||||| |||| |||||| ||||||  ||||||||     
   ccg  g  ac cgucg uuag cacaga cagcgu  gggacaau    a
uug   cu aa  c     c    u      -      uu        uuaa

Annotation confidence Not enough data

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Comments

The predicted stem-loop precursor for miR-rR1-3 does not meet the processing rules published by the same authors in [2], and therefore may be incorrect (Cullen BR, pers. comm.).

Genome context

AF210726.1: 112664-112767 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-3

Accession	MIMAT0004409
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-3 mature miRNA
Sequence	6 - CCCGAUGAGCAGUUAGUCC - 24
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27