miRBase entry: rrv-miR-rR1-5

Stem-loop rrv-miR-rR1-5

Accession

MI0005722

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-5 precursor miRNA

Sequence

caucguaacgcccCCGGAACCCAAAGACACGUGCCCGuggucuuaagaucgggcguguucuuuggauuccgucucguuacgaug
((((((((((....(((((.(((((((.(((((((((..(((....))))))))))))))))))).)))))...))))))))))

Structure

          cccC     C       C         ug   u 
caucguaacg    CGGAA CCAAAGA ACGUGCCCG  guc u
||||||||||    ||||| ||||||| |||||||||  |||  
guagcauugc    gccuu gguuucu ugugcgggc  uag a
          -ucu     a       -         --   a

Annotation confidence Not enough data

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Genome context

AF210726.1: 111474-111557 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-5

Accession	MIMAT0004412
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-5 mature miRNA
Sequence	14 - CCGGAACCCAAAGACACGUGCCCG - 37
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27