miRBase entry: rrv-miR-rR1-7

Stem-loop rrv-miR-rR1-7

Accession

MI0005724

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-7 precursor miRNA

Sequence

ugcgauucgUGGAGAGCAGUUAACGUGCGUUCccgucaauuaauaccggCGCACGUCGAUUGCUCUCUAGggauccca
...(((((.((((((((((((.(((((((...(((...........)))))))))).)))))))))))).)))))...

Structure

ugc     g            A       UUC   ucaa 
   gauuc UGGAGAGCAGUU ACGUGCG   ccg    u
   ||||| |||||||||||| |||||||   |||    u
   cuagg AUCUCUCGUUAG UGCACGC   ggc    a
acc     G            C       ---   caua

Annotation confidence Not enough data

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Genome context

AF210726.1: 111055-111132 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-7

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-7-5p

Accession	MIMAT0004415
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-7-5p mature miRNA
Sequence	10 - UGGAGAGCAGUUAACGUGCGUUC - 32
Evidence	experimental cloned [1]

Mature rrv-miR-rR1-7-3p

Accession	MIMAT0004416
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-7-3p mature miRNA
Sequence	50 - CGCACGUCGAUUGCUCUCUAG - 70
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27