Accession
MI0005795
Description
Pinus taeda
pta-MIR946b precursor miRNA
Sequence
cagaguguauggauguggauauggaaggguuaguaaacaguacaaaacccauuuaauagagauuccaucggagcaucauuguuggcuguuagaucaagcaacuguauuuugauggccacacucauugaauggguugcuuguuuugcuuuuaaccagcccuuuuucuauccaacugccuguauuuugauggccaugcucauuaaauggguuaccuguuagcuauucacCAGCCCUUCUCCUAUCCACAAcuguacuaguuug
((((.(((((((.((((((((.((((((((((((.(((((.....((((((((((((.(((...(((((((((((.....(((((((((((((.(((((((((....((((((((......))))))))..))))))))).......))))).)))))............)))....)))..)))))))).....)))))))))))))))..))))).)))).......))))))))..)))))))).)))))).).))))
((((.(((((((.((((((((.((((((((((((.(((((.....((((((((((((.(((...(((((((((((.....(((((((((((((.(((((((((....((((((((......))))))))..))))))))).......))))).)))))............)))....)))..)))))))).....)))))))))))))))..))))).)))).......))))))))..)))))))).)))))).).))))
Structure
g - a -u ------- a uacaa a --auu -- ucauu ------------ - ------u guau cc
caga u guaugg uguggaua ggaagggu uagu aacag aacccauuuaau gag ccaucgga gca guu ggcug uuaga caagcaacu uuugaugg a
|||| | |||||| |||||||| |||||||| |||| ||||| |||||||||||| ||| |||||||| ||| ||| ||||| ||||| ||||||||| ||||||||
guuu a cauguc ACACCUAU UCUUCCCG aucg uuguc uuggguaaauua cuc gguaguuu ugu caa ccgac aauuu guucguugg aaguuacu c
g u A CC ACcacuu a ---ca - guacc ua -ccgu ccuaucuuuuuc c ucguuuu --gu ca
Annotation confidence
Low
Do you think this miRNA is real?
Comments
The cloned miR946 sequences in [1] has an additional 3' A residue, which is incompatible with the genomic sequence and hairpin shown here.
Genome context
Unknown
Database links
Mature pta-miR946b
| Accession | MIMAT0005006 |
| Description | Pinus taeda pta-miR946b mature miRNA |
| Sequence | 228 - CAGCCCUUCUCCUAUCCACAA - 248 |
| Evidence |
experimental
cloned [1] |
References
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