Stem-loop rno-mir-17-2

Accession

MI0006131

Description

Rattus norvegicus rno-mir-17-2 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

72 open access papers mention rno-mir-17-2
(575 sentences)

Sequence

64204 reads, 89 reads per million, 492 experiments

uuggccauguCAAAGUGCUUACAGUGCAGGUAGcuucuugagaucuACUGCACUGCAAGCACUUCUUACauuaccaug
.(((..((((..((((((((.((((((((.(((..((....)).))))))))))).))))))))...))))..)))..

Structure

-u   cc    -CA        A        G   cu  u 
  ugg  augu   AAGUGCUU CAGUGCAG UAG  uc u
  |||  ||||   |||||||| |||||||| |||  ||  
  acc  uaCA   UUCACGAA GUCACGUC Auc  ag g
gu   au    UUC        C        -   -u  a 

Annotation confidence High

Genome context

chrX: 140117891-140117968 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-17-2

Mature rno-miR-17-5p

• Accession: MIMAT0000786
• Description: Rattus norvegicus rno-miR-17-5p mature miRNA
• Sequence: 11 - CAAAGUGCUUACAGUGCAGGUAG - 33
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-17-2-3p

• Accession: MIMAT0017295
• Description: Rattus norvegicus rno-miR-17-2-3p mature miRNA
• Sequence: 47 - ACUGCACUGCAAGCACUUCUUAC - 69
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68