Stem-loop rno-mir-463

Accession

MI0006149

Description

Rattus norvegicus rno-mir-463 precursor miRNA

Literature search

6 open access papers mention rno-mir-463
(11 sentences)

Sequence

11110 reads, 436.0 reads per million, 101 experiments

acccuguuuUACCUAAUUUGUUGUCCAUCAUGUaaaauuuaagugaUGAUAGACGCCAAUUUGGGUAGAggaaggcuc
.((.(.((((((((((.(((.((((((((((.(((...))).))))))...)))).))).)))))))))).).))...

Structure

--a  c g          U   U    ---      G   a 
   cc u uuuUACCUAA UUG UGUC   CAUCAU Uaa  
   || | |||||||||| ||| ||||   |||||| ||| a
   gg a gAGAUGGGUU AAC GCAG   GUagug auu  
cuc  a g          U   C    AUA      a   u 

Annotation confidence Medium

Genome context

chrX: 151276029-151276106 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-463

Mature rno-miR-463-5p

• Accession: MIMAT0017309
• Description: Rattus norvegicus rno-miR-463-5p mature miRNA
• Sequence: 10 - UACCUAAUUUGUUGUCCAUCAUGU - 33
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-463-3p

• Accession: MIMAT0005317
• Description: Rattus norvegicus rno-miR-463-3p mature miRNA
• Sequence: 47 - UGAUAGACGCCAAUUUGGGUAGA - 69
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249