Stem-loop rno-mir-708

Accession

MI0006160

Description

Rattus norvegicus rno-mir-708 precursor miRNA

Literature search

15 open access papers mention rno-mir-708
(81 sentences)

Sequence

68650 reads, 121 reads per million, 435 experiments

gacugcccucAAGGAGCUUACAAUCUAGCUGGGgguagaugacuugcacuugaacaCAACUAGACUGUGAGCUUCUAGagggcagggg
..((((((((.(((((((((((.(((((.((.(..(((.((.....)).)))..).)).))))).))))))))))).))))))))...

Structure

-ga        A           A     C  G gg   a  a 
   cugcccuc AGGAGCUUACA UCUAG UG G  uag ug c
   |||||||| ||||||||||| ||||| || |  ||| || u
   gacgggaG UCUUCGAGUGU AGAUC AC c  guu ac u
ggg        A           C     A  a aa   c  g 

Annotation confidence High

Genome context

chr1: 161221246-161221333 [+]

Mature rno-miR-708-5p

• Accession: MIMAT0005331
• Description: Rattus norvegicus rno-miR-708-5p mature miRNA
• Sequence: 11 - AAGGAGCUUACAAUCUAGCUGGG - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-708-3p

• Accession: MIMAT0005332
• Description: Rattus norvegicus rno-miR-708-3p mature miRNA
• Sequence: 57 - CAACUAGACUGUGAGCUUCUAG - 78
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249