Stem-loop ddi-mir-1177

Accession

MI0006245

Description

Dictyostelium discoideum ddi-mir-1177 precursor miRNA

Literature search

1 open access papers mention ddi-mir-1177
(15 sentences)

Sequence

aucaccaaauaaacuaaaCCAGUUAGGGUUUAAUGGUUCuaucucaauuguuuuuuuuuggaucccaaauuuaaucuauuuuaauuuaaaaaaugauuauuuguuauccaggaaaaauaacuggaaaagaaccguugagcccuuucugauuuauuaauuauuugaugac
.(((.(((((((..((((.(((..((((((((((((((((.((.((.(((((((((((.((((..((((..(((((.(((((.......))))))))))))))..))))))))))))))).))))..))))))))))))))))..))).))))....))))))).))).

Structure

a   c       --ac    C   UU                -a  u  a           u    cc    uu     u     aa 
 uca caaauaa    uaaa CAG  AGGGUUUAAUGGUUCu  uc ca uuguuuuuuuu ggau  caaa  uaauc auuuu  u
 ||| |||||||    |||| |||  ||||||||||||||||  || || ||||||||||| ||||  ||||  ||||| |||||  u
 agu guuuauu    auuu guc  ucccgaguugccaaga  ag gu aauaaaaagga ccua  guuu  auuag uaaaa  u
c   a       aauu    a   uu                aa  -  c           -    uu    --     -     aa 

Annotation confidence Not enough data

Genome context

DDB0232432: 593938-594106 [+]

Mature ddi-miR-1177

• Accession: MIMAT0005532
• Description: Dictyostelium discoideum ddi-miR-1177 mature miRNA
• Sequence: 19 - CCAGUUAGGGUUUAAUGGUUC - 39
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17916577
   The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway
   "Hinas A, Reimegard J, Wagner EG, Nellen W, Ambros VR, Soderbom F"
   "Nucleic Acids Res (2007) 35:6714-6726