miRBase entry: xtr-mir-427-1

Stem-loop xtr-mir-427-1


Accession
MI0006268
Description
Xenopus tropicalis xtr-mir-427-1 precursor miRNA

Literature search
1 open access papers mention xtr-mir-427-1
(1 sentences)

Sequence

agcacccaaaacggggcucucucuuguguaugaauuauggugaGAAAGUGCUUUCUGUUUUGGGCGuugu
(((.(((((((((((((.((.((((.((((.....))))..)))).)).)))..)))))))))).)))..

Structure
--   a          --   u  c    -g    u 
  agc cccaaaacgg  ggc cu ucuu  ugua g
  ||| ||||||||||  ||| || ||||  |||| a
  uuG GGGUUUUGUC  UCG GA AGag  guau a
ug   C          UU   U  A    ug    u 


Annotation confidence Not enough data
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Genome context
chr3: 133221387-133221456 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from xtr-mir-427-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-427

Accession MIMAT0005566
Description Xenopus tropicalis xtr-miR-427 mature miRNA
Sequence 44 - GAAAGUGCUUUCUGUUUUGGGCG - 66
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112