miRBase entry: oan-mir-100

Stem-loop oan-mir-100

Accession

MI0006815

Description

Ornithorhynchus anatinus oan-mir-100 precursor miRNA

Literature search

1 open access papers mention oan-mir-100
(38 sentences)

Sequence

846961 reads, 13331.0 reads per million, 5 experiments

gccuguugccacaAACCCGUAGAUCCGAACUUGUGgugauauuccacaCAAGCUUGUGUCUAUAGGUAUGugucugugggc
(((((..(.((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).)..)))))

Structure

     uu c    A   C      C   A      g  au 
gccug  g caca ACC GUAGAU CGA CUUGUG ug  a
|||||  | |||| ||| |||||| ||| |||||| ||   
cgggu  c guGU UGG UAUCUG GUU GAACac ac  u
     gu u    A   A      U   C      -  cu

Annotation confidence High

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Genome context

11: 51817656-51817736 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oan-miR-100-5p

Accession	MIMAT0007046
Description	Ornithorhynchus anatinus oan-miR-100-5p mature miRNA
Sequence	14 - AACCCGUAGAUCCGAACUUGUG - 35
Evidence	experimental Illumina [1]
Database links

Mature oan-miR-100-3p

Accession	MIMAT0007047
Description	Ornithorhynchus anatinus oan-miR-100-3p mature miRNA
Sequence	49 - CAAGCUUGUGUCUAUAGGUAUG - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 18463306
Conservation of small RNA pathways in platypus
"Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
"Genome Res (2008) 18:995-1004