miRBase entry: oan-mir-100

Stem-loop oan-mir-100


Accession
MI0006815
Description
Ornithorhynchus anatinus oan-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

564104 reads, 8149 reads per million, 5 experiments
gccuguugccacaAACCCGUAGAUCCGAACUUGUGgugauauuccacaCAAGCUUGUGUCUAUAGGUAUgugucugugggc
(((((..(.((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).)..)))))

Structure
     uu c    A   C      C   A      g  au 
gccug  g caca ACC GUAGAU CGA CUUGUG ug  a
|||||  | |||| ||| |||||| ||| |||||| ||   
cgggu  c gugU UGG UAUCUG GUU GAACac ac  u
     gu u    A   A      U   C      -  cu 


Annotation confidence High
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Genome context
Contig534: 284953-285033 [+]

Database links

Mature oan-miR-100-5p

Accession MIMAT0007046
Description Ornithorhynchus anatinus oan-miR-100-5p mature miRNA
Sequence 14 - AACCCGUAGAUCCGAACUUGUG - 35
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-100-3p

Accession MIMAT0007047
Description Ornithorhynchus anatinus oan-miR-100-3p mature miRNA
Sequence 49 - CAAGCUUGUGUCUAUAGGUAU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004