Stem-loop oan-mir-99a

Accession

MI0006897

Description

Ornithorhynchus anatinus oan-mir-99a precursor miRNA

Literature search

1 open access papers mention oan-mir-99a
(1 sentences)

Sequence

126330 reads, 2747.0 reads per million, 5 experiments

gugugauaaugccaguuggcauaAACCCGUAGAUCCGAUCUUGUGgugaagugaaauacaCAAGCUCGCCUCUCUGGGUCUGugucagugugguaaucggac
((.((((..(((((.((((((((.(((((.(((..(((.((((((.............)))))).)))..))).))))).))))))))..))))))))).))

Structure

  g    aa     -g        A     U   UC   U      gugaa 
gu ugau  ugcca  uuggcaua ACCCG AGA  CGA CUUGUG     g
|| ||||  |||||  |||||||| ||||| |||  ||| ||||||     u
ca gcua  auggu  gacuguGU UGGGU UCU  GCU GAACac     g
  g    --     gu        C     C   CC   C      auaaa 

Annotation confidence High

Genome context

17: 19916690-19916791 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-99a

Mature oan-miR-99a-5p

• Accession: MIMAT0007183
• Description: Ornithorhynchus anatinus oan-miR-99a-5p mature miRNA
• Sequence: 24 - AACCCGUAGAUCCGAUCUUGUG - 45
• Evidence: experimental ; Illumina [1]

Mature oan-miR-99a-3p

• Accession: MIMAT0007184
• Description: Ornithorhynchus anatinus oan-miR-99a-3p mature miRNA
• Sequence: 61 - CAAGCUCGCCUCUCUGGGUCUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004