Dead hairpin entry

Stem-loop gma-MIR1517

Accession

MI0007230

Description

Glycine max gma-MIR1517 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention gma-MIR1517
(3 sentences)

Sequence

8160 reads, 26.0 reads per million, 176 experiments

gcuagguauuuuugaccgacauuagacaugacuauuuuuagucgacauugacuaaguuuuuacagucgacauccacuagaguuuuuucgaucgacaucggucaaagcaauuuuuuagccaacaucaaucaaggcuauuuuauagccGAUGUUGGGUAGGGUUUUUUauucgacaucagucagggcuauuuuuuagccaacuucgacuagagauuuuucagccaacauugacuaaugauguuuuucagucgacaucggguagguucuauuggucggcaucgaccaagcuauuuuuuagucgauacuagauagauuuuuuugucaacgccugcuaggauuuuuuagguugacguuggcuaaaaauAGUCUUGGUCAAUGUCGUUCGAAAaaacccuagu
((((((..(((((((.(((((((.(((..(((((((((((((.((..((((((..((....))))))))..)).))))))(((((...(((((....)))))))))).....((((((((((.((((((..((((((...))))))(((((((((((((....)))))))))))))......(((((.....)))))....((((((.((((....(((...............)))....)))))))))).(((.(((((((....(((((((....)))))))((((.....))))........((((((....))))))...)))))))..)))......)))))).)))))))))))))))))...)))))))))).)))))))...))))))

Structure

      -ua       c       a   -au       uuuagucgacauugacuaaguuuuuacagucgacauccacuagaguuuuuucgaucgacaucggucaaagcaauuu          a      ------------------------------------------------------------------------------------------------------------------------------------------------------aaggcuauuuuauagcc             G 
gcuagg   uuuuuga cgacauu gac   gacuauu                                                                            uuuagccaac ucaauc                                                                                                                                                                       GAUGUUGGGUAGG U
||||||   ||||||| ||||||| |||   |||||||                                                                            |||||||||| ||||||                                                                                                                                                                       |||||||||||||  
ugaucc   aAAAGCU GCUGUAA CUG   CUGAuaa                                                                            aaaucgguug aguugg                                                                                                                                                                       cuacagcuuaUUU U
      caa       U       -   GUU       ----------------------------------------------------------------------------          c      auuuuuuaggaucguccgcaacuguuuuuuuagauagaucauagcugauuuuuuaucgaaccagcuacggcugguuaucuuggaugggcuacagcugacuuuuuguaguaaucaguuacaaccgacuuuuuagagaucagcuucaaccgauuuuuuaucgggacuga             U