Stem-loop gma-MIR1517

Accession

MI0007230

Description

Glycine max gma-MIR1517 precursor miRNA

Literature search

2 open access papers mention gma-MIR1517
(3 sentences)

Sequence

gcuagguauuuuugaccgacauuagacaugacuauuuuuagucgacauugacuaaguuuuuacagucgacauccacuagaguuuuuucgaucgacaucggucaaagcaauuuuuuagccaacaucaaucaaggcuauuuuauagccgauguuggguaggguuuuuuauucgacaucagucagggcuauuuuuuagccaacuucgacuagagauuuuucagccaacauugacuaaugauguuuuucagucgacaucggguagguucuauuggucggcaucgaccaagcuauuuuuuagucgauacuagauagauuuuuuugucaacgccugcuaggauuuuuuagguugacguuggcuaaaaauAGUCUUGGUCAAUGUCGUUCGAAAaaacccuagu
((((((..(((((((.(((((((.(((..(((((((((((((.((..((((((..((....))))))))..)).))))))(((((...(((((....)))))))))).....((((((((((.((((((..((((((...))))))(((((((((((((....)))))))))))))......(((((.....)))))....((((((.((((....(((...............)))....)))))))))).(((.(((((((....(((((((....)))))))((((.....))))........((((((....))))))...)))))))..)))......)))))).)))))))))))))))))...)))))))))).)))))))...))))))

Structure

      -ua       c       a   -au       uuuagucgacauugacuaaguuuuuacagucgacauccacuagaguuuuuucgaucgacaucggucaaagcaauuu          a      aaggcuauuuuauagccgauguuggguaggguuuuuuauucgacaucagucagggcuauuuuuuagccaacuucgacuagagauuuuucagccaacauugacuaaugauguuuuucagucgac   -g       ucuauuggucggcaucgaccaagcuauuuu 
gcuagg   uuuuuga cgacauu gac   gacuauu                                                                            uuuagccaac ucaauc                                                                                                                           auc  gguaggu                              u
||||||   ||||||| ||||||| |||   |||||||                                                                            |||||||||| ||||||                                                                                                                           |||  |||||||                               
ugaucc   aAAAGCU GCUGUAA CUG   CUGAuaa                                                                            aaaucgguug aguugg                                                                                                                           uag  ucguccg                              u
      caa       U       -   GUU       ----------------------------------------------------------------------------          c      ---------------------------------------------------------------------------------------------------------------------auuuuu   ga       caacuguuuuuuuagauagaucauagcuga 

Annotation confidence Not enough data

Genome context

chr14: 43676665-43677061 [+]

Mature gma-miR1517

• Accession: MIMAT0007376
• Description: Glycine max gma-miR1517 mature miRNA
• Sequence: 364 - AGUCUUGGUCAAUGUCGUUCGAAA - 387
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160