Stem-loop gma-MIR1519

Accession

MI0007232

Description

Glycine max gma-MIR1519 precursor miRNA

Sequence

uaucuuuacaUAAGUGUUGCAAAAUAGUCAUUccguuaaauuuuaaaguaacaccguuagugagaucaauuuuagugccacgugaacuauccaauauagcacuaaaggaugacgugacaugacauguggacgugucuccuaaaagaugucacgucauuuugaaaguccacgagacauuucacaaccuuugcaaugcauggacacuuuaagcacgauuucugacaucuuuuaaguuagagacuauuuugcaauacuuaugcaaaagau
.((((((.(((((((((((((((((((((....(((.....((((((((..(((.....)))........((((((((....((.......)).....))))))))((((((((((((((((((((....)))))).........))))))))))))))((((((((.....))).)))))...((..(((...))).))..)))))))).)))...((((((.........)))))))))))))))))))))))))))..))))))

Structure

u      -a                     --------------------AUUc   uaaau        aacaccguuagugagaucaauuuuagugccacgugaacuauccaauauagcacuaaa              ---------      u 
 aucuuu  caUAAGUGUUGCAAAAUAGUC                        cgu     uuuaaagu                                                         ggaugacgugacau         gacaug g
 ||||||  |||||||||||||||||||||                        |||     ||||||||                                                         ||||||||||||||         ||||||  
 uagaaa  guauucauaacguuuuaucag                        gca     gaauuuca                                                         uuuacugcacugua         cugugc g
-      ac                     agauugaauuuucuacagucuuua   ----c        --------------cagguacguaacguuuccaacacuuuacagagcaccugaaagu              gaaaauccu      a 

Annotation confidence Not enough data

Genome context

chr7: 11379900-11380166 [+]

Mature gma-miR1519

• Accession: MIMAT0007378
• Description: Glycine max gma-miR1519 mature miRNA
• Sequence: 11 - UAAGUGUUGCAAAAUAGUCAUU - 32
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160