Stem-loop gma-MIR1525

Accession

MI0007242

Description

Glycine max gma-MIR1525 precursor miRNA

Sequence

3656 reads, 28.0 reads per million, 176 experiments

uauauaauuuuggguuaauuaaguuuuuagucccuauaaauAUUCAUAGUUUUGUUUUUAgucccuacaaaauaagaucacacuuuuuaguccuugugacauuuuccuuaagcauuuuagggacuaaaacuguugaugaaauuuuuuuacagggacuaaaagugccgaugaaaaaauuuauagggacuaaaaaguaugauuuuauuuuguaaggacuaaaaacaaaacugugaauauuuauaggacuaaaaacuuaauuaauccuauaauuuuu
...........((((((((((((((((((((((.((((((((((((((((((((((((((((((.(((((((((((((((.((((((((((((((((((((((((((((((.....)))))))...))).))))....(((((((((((..((.(((...))).))..))))))))))))))))))))))))))).))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))..........

Structure

uauauaauuuu                      c                              c               c                gacauuuuccuuaagcauuuuagggacuaaaacuguugaug           ca  g   a 
           ggguuaauuaaguuuuuagucc uauaaauAUUCAUAGUUUUGUUUUUAgucc uacaaaauaagauca acuuuuuaguccuugu                                         aaauuuuuuua  gg acu  
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||                                         |||||||||||  || ||| a
           ccuaauuaauucaaaaaucagg auauuuauaagugucaaaacaaaaaucagg auguuuuauuuuagu ugaaaaaucagggaua                                         uuuaaaaaagu  cc uga  
-uuuuuaauau                      -                              a               a                -----------------------------------------           ag  g   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature gma-miR1525-5p

• Accession: MIMAT0007386
• Description: Glycine max gma-miR1525-5p mature miRNA
• Sequence: 42 - AUUCAUAGUUUUGUUUUUA - 60
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160