Dead hairpin entry

Stem-loop gma-MIR1534

Accession

MI0007254

Description

Glycine max gma-MIR1534 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Sequence

7039 reads, 129.0 reads per million, 177 experiments

gauuaaauuaUAUUUUGGGUAAAUAGUCAUuuucaucccugaauguguagagcgcuaacaaauucguccuuaaaugugucacauaggcuuuuucauuaacgguaacaaauggacagauuugucgcauuuuuuucacuuuuagagacuaaaauuugaauuuuuaucuuucggagacgaauuuauuagugcucugcacauucAAGGACAAAAAUGAUUAUUUAcccuuuaaaauaaguuuggcau
(.(((((((.(((((((((((((((((((((((..(((.(((((((((((((((((((.((((((((((((((((.((((.(((..(((.((.....)).))).....))))))).)))))...................(((((..(((((....)))))..))))).)).))))))))).))))))))))))))))))).)))..)))))))))))))))))...))))))))))))))..

Structure

-- a       a      ---                 ca   c                   c         -  ------------------------------------------------     g    a   ---ag   u  u 
  g uuaaauu UAUUUU   GGGUAAAUAGUCAUuuu  ucc ugaauguguagagcgcuaa aaauucguc cu                                                uaaau uguc cau     gcu uu c
  | ||||||| ||||||   |||||||||||||||||  ||| ||||||||||||||||||| ||||||||| ||                                                ||||| |||| |||     ||| || a
  c gguuuga auaaaa   cccAUUUAUUAGUAAAA  AGG Acuuacacgucucgugauu uuuaagcag gg                                                guuua acag gua     ugg aa u
ua -       -      uuu                 AC   A                   a         a  cuuucuauuuuuaaguuuaaaaucagagauuuucacuuuuuuuacgcu     g    -   aacaa   c  u