Stem-loop gga-mir-1643

Accession

MI0007375

Description

Gallus gallus gga-mir-1643 precursor miRNA

Literature search

1 open access papers mention gga-mir-1643
(4 sentences)

Sequence

ucuuggaaguauaugcugauUCUUAUCACGAGGAGCACUUUUuugaaagcacuuuuaUAAAAGUGCUGCUGGUGGAAGAAgcugccuguaugagg
.(((....(((((.((...(((((.((((.((.(((((((((.(((((....))))).))))))))).)).)))))))))...)).)))))))).

Structure

u   ggaa     u  uga     A    G  G         u     g 
 cuu    guaua gc   uUCUU UCAC AG AGCACUUUU ugaaa c
 |||    ||||| ||   ||||| |||| || ||||||||| |||||  
 gag    uaugu cg   AAGAA GGUG UC UCGUGAAAA auuuu a
g   ----     c  ucg     -    G  G         U     c 

Annotation confidence Not enough data

Genome context

chr11: 2000812-2000906 [-]

Mature gga-miR-1643-5p

• Accession: MIMAT0007518
• Description: Gallus gallus gga-miR-1643-5p mature miRNA
• Sequence: 21 - UCUUAUCACGAGGAGCACUUUU - 42
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1643-3p

• Accession: MIMAT0007519
• Description: Gallus gallus gga-miR-1643-3p mature miRNA
• Sequence: 58 - UAAAAGUGCUGCUGGUGGAAGAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964